PhD Position in Statistics with a focus on Statistical Machine Learning for Self-Driving Microscopy

Universität Bern
2 months ago

Role details

Contract type
Temporary contract
Employment type
Full-time (> 32 hours)
Working hours
Regular working hours
Languages
English
Compensation
CHF 10K

Job location

Tech stack

Computer Programming
Python (Programming Language)
Matlab
Machine Learning
Gaussian

Job description

PhD Position in Statistics with a focus on Statistical Machine Learning for Self-Driving Microscopy 100%

We are seeking highly qualified, motivated and creative candidates wishing to join a collaborative project at the interface of statistical machine learning and live-cell biology. The PhD in statistics will be co-supervised by Prof. David Ginsbourger (Statistics) and Prof. Olivier Pertz (Cell Biology), and the student will be equally embedded in both research environments. Your Environment This project provides a rare opportunity to see statistical machine learning models come alive, guiding live experiments. The recruited PhD student will evolve between both groups and become fluent in communicating across disciplines, a major career asset. Project Overview Cells sense, integrate, and respond to dynamic stimuli through complex signaling networks. The Pertz Lab has developed powerful optogenetic tools and fluorescent biosensors that allow direct perturbation and measurement of these networks using light. D. Ginsbourger's group is Internationally recognized in Gaussian process modeling, Bayesian optimal design, and statistical data science for the sciences. Together, we aim to create autonomous "self-driving" microscopes that:

  • build statistical models of biological dynamics in real time
  • predict the most informative next experiment
  • execute it automatically on living cells

Key methods will include Gaussian Processes (heteroscedastic & multivariate), Operator-valued and deep kernels, Active learning / Bayesian experimental design, Physics-informed machine learning, Closed-loop control of biological systems., * BSc and MSc transcripts (in one of Switzerland's official languages, or English) of scores

  • Contact information for two references
  • Any other relevant document

Requirements

The ideal candidate will have recently earned or be about to finish their master's degree in statistics or neighboring subjects with a strong mathematical component, a genuine interest in statistical data science and applications thereof, a taste for both theoretical investigations and numerical experiments, solid programming skills (Python, R, Julia, Matlab...), motivation to work closely with experimental researchers, and, of course, curiosity about biological systems - no prior wet-lab experience needed!

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